Examples of Pipeline workflows for computational neuroscience
It includes a list of newly added complete Pipeline Neuroimaging Solutions (data, modules and workflows) that are developed, included and documented as part of the latest LONI Pipeline environment release, including the following subjects:
- MDT Atlasing Workflow
- Automated Tissue Volume Extraction Workflow
- Automated 56-ROI Brain Volume Extraction Workflow
- Global Shape Analysis (GSA) Workflow
- Local Shape Analysis (LSA) Workflow
- Cortical Surface Extraction Workflow
- Automated Complete Cortical Thickness Workflow
- SVPASEG Workflow
- DTI/DSI Workflow
- First Level with-in subject fMRI processing Workflow
- Higher Level 2 group comparison fMRI processing Workflow
- BrainSuite Cortical Surface Extraction
- Cortical Surface Labeling
- Direct Hippocampal Mapping
- DICOM Anonymizer
- DICOM Summarize
- IRMA Workflow
- Automatic Registration Toolbox
- PCA Registration
- Rat Brain Functional Analysis
- Mouse Workflows
- Bioinformatics and Genomics Workflows
- Pipeline invocation of R-scripts
- Template Workflow Usage/Docs page
- Committing Pipeline Workflows to core Pipeline server library
